CDS

Accession Number TCMCG051C25211
gbkey CDS
Protein Id XP_024462867.1
Location complement(join(4570495..4570503,4570607..4571983,4572306..4572443,4572555..4574189,4574538..4574788,4575303..4575351))
Gene LOC7462098
GeneID 7462098
Organism Populus trichocarpa

Protein

Length 1152aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024607099.1
Definition SNF2 domain-containing protein CLASSY 2 isoform X3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA repair and recombination protein RAD54-like protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10875        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03440        [VIEW IN KEGG]
map03440        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000018        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006311        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006338        [VIEW IN EMBL-EBI]
GO:0006342        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0015616        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030491        [VIEW IN EMBL-EBI]
GO:0030702        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0033170        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035822        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0035861        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061806        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090734        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAGAGAAAGCGTTTACATCAGTCCAAGCATCCATTTAATGCACACCCTTTTGAGGCCTTATGCTGTGGCTCTTGGCAAAGCGTGGAGCTTATACAAATCAGGGATGGGGCTATGACTGTGCATTTTGTAGATGGCCATCATAGAATTGAGGAGAAGGGTCCTTTCTCAAACGTTCGAGTGAAGTCGAGGAAAGCTACTTCATCTGATTGCACATGCTTTCTGAGGCCTGGTATTGATGTTTGTGTGCTTTCATCTTCTGAGCGTGCGAAGAATACTGGGGAAGGAAATTCAGAACCTGTGTGGGTTGATGCTAAGATAAGTTCTATCAAGCGGAAACCTCATGTATCTCACTGCTCATGTCAATTTTTTGTTAACCTCTATGTTAACCAAGGCCCTCTTGGTTCAGAGAGAGCCAGACTTAGTAAAGAAACTGAAGCAGTAGGAATCAATGAAATTTCTGTTCTTCAGAAACTTGACAACGATCCATGTGAAGCAGACAACAATCAGCAAGAAGCTCAGTTCTATCGATGGGAATTTTGTGAGGACTGTTCTTTAGTACAAAGAAGCAAACTCTTTTTGGGGAGGTTTTCAGCTGACCTTACATGGCTGCTTGTAGCATCAGTTCTGAAGCAAGTTGAATTTGATGTAAGGTCAGTCCAAAATAAAATTGTCTACCAAATTTTGGGTGGTGAGAATGAGCACTGTTCATTAAAATCTAATAATCACATAAACTGTGTAACTTTCAAAGTGAAAGACAGTATTTCAACCCCATTTGTGGTCCAATTGGTTCCCACTGATGCTTGTAGTGAAGCAGGCCATATTAGTGACACCAATGGGACCAAACAATCACCATGCTATGATGTTATGAGTTTGCGGCGGTCAAAGCGTCGAAATGTACAACCTGAACGCTTCCTTGCCTGTGATGCTCCTGCAGAGACAGAAATTGGCTGGGTAAGATCCCTGCCATACACACCACTGAAGTGGAAGGCAGAAGAAGAAGAAGAAGAAGAAATGCACTTACCACTGGCATACCTGTTTGGGACACATGCAGGTGCAAGTTGTGCAGAAGAGCAAACATGCAACGAAGTGGGAGCTAGTTCTCCTAAACTAGAACTCTTGGAAGGTATCCCTGTTTCCAGAACCAAGACTTACTTGAAGGAGATTAAATCAAATGTGGTTAACAGAAGAGATCACCAAACTGAGCCCGGGGAGGTTCGAGCAGGCATGGCTAAGAGAAGAGAATGCCAAAAGTCAACCATGGCTGACCGAATAGAACACCAAACTCGACTCGGGGATGCTGAATCAGGCATGGCCAACAGAAAAAAGCATGGAACTCAAATTAGGGAGGTTAAATCAGGCGTGGCTAACAGAAGAGAACACCAAGATCAACTTGCTATTGTTCCTGTGCATACTGAAGATGTTCTGGCAACCTTTGAACAATTTGATTCCCCTGTGAAGACTCCTGAACCTTATTCACAAGCGTTTATTGAATTTCCGATTAGTTATTACAGAAAAAAGAGTTCTCCTGCTGCGCACAGGAAGAATGATCGTGATGAAGATTTGATGTTCGGAAATGGATGGGGTGGAAAATTTTCTACTAAGAAAGTTCAAAGAGCAAGATATCGATCCACACATTTAAAGCAGGATGGTTCTTGTGCGCCAATGACTTACAAGCGGACAGCCTTAAGTGCTGGTGCTTACAATAAACTCATAAGTTCTTATATGAAGAACATTGATGCCACAATCAAGTCAAAGGAGGTACCACGCATTATTGACCAGTGGGAAGAGTTTAAAGCAAAACATAGCTCAGATCAGAAGGAGAAAATGGAACCATCTTCGGTTAAGGATGATGGAGAAAGCTCAGAAACTGAAATGTTGTGGAGAGAGATGGAACTATGCCTGGCATCAGCATATATACTTGAAGATAATGAGGATTTGCAGGCTCTACTTTCCACTCGGACTACACAGAAAAATTGCCAGCACGAATTCAAACTGGATGAAGAAATTGGGATATTATGCCAAATATGCGGCTTTGTGAAAACTGAAATAAAATATGTTTCAGCACCATTTATGGAACACACAGGCTGGACTGCAGAAAGTAAGCCACAGAATGAAGAGGATTCGGAGCTTAAACCTGATGAAGATGAGGGCTCGAGTCTTTTTGGCAATCATACTTCAGGTGAAGATGTGCCTGTATCAGAAGTGAATGACAATGTTTGGGACTTGATCCCTGAGCTCAGACCGAAATTACACATGCACCAGAAAAAGGCTTTTGAGTTTCTATGGAAGAACACTGCTGGATCCTTGGTACCGGCACATATGGAAAAAACATCTAAGAAGATAGGTGGTTGTGTTGTTTCTCATACTCCTGGAGCTGGAAAAACATTTCTCATCATTGCATTCCTTGTCAGCTACTTGAAGTTGTTTCCAGGAAAACGGCCTCTGGTCCTTGCTCCAAAGACAACTCTCTATACCTGGTACAAGGAATTTATCAAGTGGGAAATCCCTGTTCCAGTTCATCTTATCCATGGCACCAGATCTTCTAGAGCCTTCAAGCAGACTCCAGCAGCGCTTCGAGGATCAGGTCCAAGGCCCAGCCAGGATGTTGTGCATATTTTGGATTGCCTGGAGAAAATGCAAAAGTGGCATGCACAACCAAGTGTGCTTGTCATGGGCTATACCTCATTTCTGACATTGATGAGAGAAGACTCGAAGTACAACCACAGAAAATATATGGCTAAAGTGCTGCGAGAGAGTCCTGGAATGTTGATACTTGATGAAGGACACAACCCCAGGAGTGCAAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTGGAAACAGATCTGAGAATATTGCTTTCAGGTACTTTGTTTCAGAATAATTTTTGTGAATATTTCAACACCCTTACCCTGGCAAGACCAATGTTTATCAAAGAAGTTCTGAAGGCATTAGACCCGAAGTTTAAGAGGAAAAAGAAAGGGGCACAAAAGGCACGTCATTTGCTGGAATCTCGCGCCAGAAAATTCTTCATAGATAACATTGCAAGCAAAATTAATTCGGATGAGGCTGAAGAGAAAATGCAGGGTTTGAATATGCTGAGAAACATGACTAATGGGTTCATTGACGTGTATGAAGGCACAGCATCTGACACCCTTCCTGGTATACAGATTTACACCATATTGATGAATCCAACAGATATTCAACATCAGATTTTGGTGAAACTCCATAAAATAATGGAAAAATGCCCTGGATACCCCCTGGAAGTAGAGCTTTTGATAACTCTTGCTTCAATACATCCTTCATTGGTCAATTCTTCTGTCTGTGTTAAAAAATTTTATAATCTGGAGGAACTGATGGAACTTGAGAAGTTAAGATTTGATTGTAAGAAAGGGTCCAAGGTGATGTTTGTGTTGAATCTTGTGTATCGTGTAGTCAAGAACGAGAAGGGGAACTAG
Protein:  
MKRKRLHQSKHPFNAHPFEALCCGSWQSVELIQIRDGAMTVHFVDGHHRIEEKGPFSNVRVKSRKATSSDCTCFLRPGIDVCVLSSSERAKNTGEGNSEPVWVDAKISSIKRKPHVSHCSCQFFVNLYVNQGPLGSERARLSKETEAVGINEISVLQKLDNDPCEADNNQQEAQFYRWEFCEDCSLVQRSKLFLGRFSADLTWLLVASVLKQVEFDVRSVQNKIVYQILGGENEHCSLKSNNHINCVTFKVKDSISTPFVVQLVPTDACSEAGHISDTNGTKQSPCYDVMSLRRSKRRNVQPERFLACDAPAETEIGWVRSLPYTPLKWKAEEEEEEEMHLPLAYLFGTHAGASCAEEQTCNEVGASSPKLELLEGIPVSRTKTYLKEIKSNVVNRRDHQTEPGEVRAGMAKRRECQKSTMADRIEHQTRLGDAESGMANRKKHGTQIREVKSGVANRREHQDQLAIVPVHTEDVLATFEQFDSPVKTPEPYSQAFIEFPISYYRKKSSPAAHRKNDRDEDLMFGNGWGGKFSTKKVQRARYRSTHLKQDGSCAPMTYKRTALSAGAYNKLISSYMKNIDATIKSKEVPRIIDQWEEFKAKHSSDQKEKMEPSSVKDDGESSETEMLWREMELCLASAYILEDNEDLQALLSTRTTQKNCQHEFKLDEEIGILCQICGFVKTEIKYVSAPFMEHTGWTAESKPQNEEDSELKPDEDEGSSLFGNHTSGEDVPVSEVNDNVWDLIPELRPKLHMHQKKAFEFLWKNTAGSLVPAHMEKTSKKIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGTRSSRAFKQTPAALRGSGPRPSQDVVHILDCLEKMQKWHAQPSVLVMGYTSFLTLMREDSKYNHRKYMAKVLRESPGMLILDEGHNPRSAKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLTLARPMFIKEVLKALDPKFKRKKKGAQKARHLLESRARKFFIDNIASKINSDEAEEKMQGLNMLRNMTNGFIDVYEGTASDTLPGIQIYTILMNPTDIQHQILVKLHKIMEKCPGYPLEVELLITLASIHPSLVNSSVCVKKFYNLEELMELEKLRFDCKKGSKVMFVLNLVYRVVKNEKGN